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So, it turns out that the machine we were running the gallery on was unable to remain online long enough to properly offload the data.
Our host has performed a ddrescue and migration to recover the data and migrate the machine.
Its taken a while, but we are now off that god forsaken failing server, and on to a brand new box!
This should allow us to run much smoother now, and not go offline every 5 hours!
Hopefully this is the end of the gallery server nightmare.